PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco008955.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ARF
Protein Properties Length: 662aa    MW: 72907 Da    PI: 7.5127
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco008955.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.23.7e-24120221199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d++g+ W++++iyr++++r++lt+GW+ Fv++++L +gD++vF+  + +++ 
  Aco008955.1 120 FAKTLTQSDANNGGGFSVPRYCAETIfpkldysADPPVQ--TVLAKDLHGEMWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFM--RAENGD 213
                  89****************************996555555..8999*********************************************..448899 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+v+++r+
  Aco008955.1 214 LCVGIRRA 221
                  9****997 PP

2Auxin_resp112.53.9e-37284367183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  aa+ a+++++FevvY+Prast+eF+vk++ v++a+++++++GmRfkmafetedss++++ +Gtv++ + +d ++WpnS+Wr+L+
  Aco008955.1 284 AARLAASGQPFEVVYYPRASTPEFCVKAAAVRAAMSINWCPGMRFKMAFETEDSSRISWfMGTVSAAQIADHIKWPNSPWRLLQ 367
                  68899*****************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.2E-38112223IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-29115224IPR015300DNA-binding pseudobarrel domain
CDDcd100171.28E-20119220No hitNo description
SMARTSM010195.7E-22120222IPR003340B3 DNA binding domain
PROSITE profilePS5086313.169120222IPR003340B3 DNA binding domain
PfamPF023622.5E-22120221IPR003340B3 DNA binding domain
PfamPF065073.6E-32284367IPR010525Auxin response factor
PROSITE profilePS5174520.28554634IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MKNVDTKCVD SQLWHACAGG MVQMPAVHSK VYYFPQGHAE HAVGPVEFAQ LRIPAFVLCR  60
VSAVKFLADP ETDEVFAKIR LIPIKPNDPN YCNEDEEYDD IDGIGLTMGG NDSREKPASF  120
AKTLTQSDAN NGGGFSVPRY CAETIFPKLD YSADPPVQTV LAKDLHGEMW KFRHIYRGTP  180
RRHLLTTGWS TFVNQKKLVA GDSIVFMRAE NGDLCVGIRR AKRVGLDAPS GWNAPGGHCM  240
PTYETYSLFL REDERRLCKG NGNMSCSAIM SGKGRVGPES VSEAARLAAS GQPFEVVYYP  300
RASTPEFCVK AAAVRAAMSI NWCPGMRFKM AFETEDSSRI SWFMGTVSAA QIADHIKWPN  360
SPWRLLQVTW DEPDLLQNVR SVNPWLVELV SAIPSIRLGP FSSPRKRPRL PYPHPYHRPE  420
FPLESRLPSQ IYQGNPLGLG LGFTPAGIQG ARHAQFGIPL SDQTLLTPRI SKGLIVGSLP  480
IDENKTRVSF TKKSENGITP KLVLFGQPIL TEEQLSMSNS MNSSSDGSGS AINQNGTLDN  540
LSSDRWGSNL ALESGHCKVF MESEEIGRTV DLSIFGSYEE LYGQLADMFG VKKAKLMSHV  600
LYRDAAGALK HTGDEPFSEF MKTARRLTIL PDAGSDNLAR KQFLSFPAVS VIFSFCGDLD  660
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-77938851388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6677948e-61KM667794.1 Ananas bracteatus clone 53236a microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008785277.10.0PREDICTED: auxin response factor 18-like isoform X2
RefseqXP_008785276.10.0PREDICTED: auxin response factor 18-like isoform X2
RefseqXP_008785275.10.0PREDICTED: auxin response factor 18-like isoform X1
RefseqXP_008785274.10.0PREDICTED: auxin response factor 18-like isoform X1
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A061ET580.0A0A061ET58_THECC; Auxin response factor
STRINGORGLA06G0209500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16